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Accepted Papers
RECOMB 2007 ACCEPTED PAPERS Heuristics for the Gene-duplication Problem: A
Q(n) Speed-up Framework for Identifying Common Aberrations in
DNA Copy Number Data Estimating Genome-wide Copy Number Using Allele
Specific Mixture Models Improved Ranking Functions for Protein and Modification-Site
Identifications Reconstructing the topology of protein complexes Identification of Deletion Polymorphisms from
Haplotypes QNet: A Tool for Querying Protein Interaction
Networks An Efficient Method for Dynamic Analysis of Gene
Regulatory Networks and in-silico Gene Perturbation Experiments Network Motif Discovery Using Subgraph Enumeration
and Symmetry-Breaking Comparative Analysis of Spatial Patterns of Gene
Expression in Drosophila melanogaster Imaginal Discs Nucleosome Occupancy Information improves de novo
Motif Discovery Beyond Galled Trees - Decomposition and Computation
of Galled Networks Deterministic Pharmacophore Detection via Multiple
Flexible Alignment of Drug-Like Molecules Free Energy Estimates of All-atom Protein Structures
Using Generalized A Bayesian Model that Links Microarray mRNA Measurements
to Mass Spectrometry Protein Measurements Peptide Retention-Time Prediction Yields Improved
Tandem Mass Spectrum Identification for Diverse Chromatography Conditions Production-Passage-Time Approximation: A New Approximation
Method to Accelerate the Simulation Process of Enzymatic Reactions RB-Finder: An Improved Distance-based Sliding
Window Method to Detect Recombination Breakpoints Multiple Sequence Alignment Based on Profile Alignment
of Network Legos: Building Blocks of Cellular Wiring
Diagrams Protein Conformational Flexibility Analysis with
Noisy Data Reconstructing the Phylogeny of Mobile Elements Rearrangements in Genomes with Centromeres —
Part I: Translocations Design of Compact, Universal DNA Microarrays for
Protein Binding Multivariate Segmentation in the Analysis of Transcription
Tiling Array Data Connectedness Profiles in Protein Networks for
the Analysis of Gene A Fast and Accurate Algorithm for the Quantification
of Peptides from A Feature-Based Approach to Modeling Protein-DNA
Interactions GIMscan: A New Statistical Method for Analyzing
Whole-Genome Array CGH Data Pairwise Global Alignment of Protein Interaction
Networks By Matching Neighborhood Topology An Efficient and Accurate Graph-based Approach
to Detect Tools for Simulating and Analyzing RNA Folding
Kinetics Estimating Genome-wide Copy Number using Allele
Specific Mixture Models Variational Upper Bounds for Probabilistic Phylogenetic
Models Association Mapping of Complex Diseases with Ancestral
Recombination Graphs: Models and Efficient Algorithms Minimizing and Learning Energy Functions for Side-Chain
Prediction Support Vector Training of Protein Alignment Models Shift Invariant Adaptive Double Threading: Learning
MHC II - peptide binding
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