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  Poster Presenters

RECOMB 2007 POSTER PRESENTERS

Session A
Sunday, April 22: 5:30 pm – 7:30 pm
Monday, April 23: 7:30 am – 5:00pm

Gene Identification and Functional Classification of the Hookworm Genome

Support Vector machine and Clique based Approach for Feature Selection in Protein Profiles

Linking of Chromosomes During Interphase

Identification, combination and implementation of linguistic fuzzy rules in acute leukemia using gene expression and covariate data

Accurate Sequence-Structure Alignment of Multiple RNA Sequences

Structural information greatly improves the accuracy of protein interactions inferred from homology

RNA Structure Evolution and Transducer Composition

Glycosylation Site Prediction Using Machine Learning Approaches

miRTar: a fast and efficient microRNA target prediction web server

PTM-X: an Integrated Platform for Identifying Protein Post-Translational Modification Sites

RNASMotif: A Web Server for Discovering RNA Structural Motif in Unaligned Sequences

A statistical approach using network structure in the prediction of protein characteristics

Human X chromosome reveals pronounced early population subdivisions and recent bottlenecks

Deriving Functional Signatures from Protein Sequences by Iterative Pattern Mining

Efficient Molecular Dynamics (MD) simulation on Field Programmable Gate Array (FPGA)s with MultiGrid method

Sequences Conserved by Selection across Mouse and Human Malaria Species

A Fuzzy Games Approach of RNA-based Gene Regulation

Maximizing SNP Prediction Accuracy Increases the Power in Association Studies

Comparing Sequence vs Structure-based Predictions of RNA Binding Sites in Proteins

Anonymous in-house and public reference sets for copy-number analysis of a small number of Affymetrix SNP arrays

In vitro and in vivo expression, immunological characterization and invasin-like role of mammalian cell entry (Mce) proteins encoded by mce3 operon of Mycobacterium tuberculosis

On Criterions of Multiple Alignment Quality

Prior Knowledge for Discovery Proteomics Data Interpretation

Cytochrome P450 Structures _ Structural and Phylogenetic analysis

Informative Positional Priors Improve De Novo Motif Discovery

A semiparametric mixture model for identifying cis-acting regulatory elements

Enhancements to the GBrowse Genome Browser

A new seeding strategy for DNA alignment

PSLDoc:Protein Subcellular Localization prediction based on Document classification

Heart Aged-Match between Human Fetus and Mouse Fetus Based on Microarray Gene Expression Profiles

Inference in Phylogenetic Factorial Hidden Markov Models

The Isotope Wavelet: A Signal Theoretic Framework for Analyzing Mass Spectrometry Data

Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP enriched Regions

An Algorithm to Find Co-Regulated Gene Clusters: Adjustment for Random Variability of Gene Expression Data.

ProSplign-Protein to Genomic Alignment Tool

Computational Identification of Essential Reactions in Plasmodium falciparum to yield Potential Drug Targets

Modeling DNA unknotting by type II topoisomerases

BioCell : A Visualization System for Protein Interactions and Comparmentations

Systematic Identification Of Cis-Acting Sequences Reveals NF-Y As A Regulator Of Embryonic Stem Cells

Experimental validation of computationally identified novel transcriptional units in mouse embryonic stem cells

A Simple Genbank Search Engine

Membrane-Binding Mechanism of Peripheral Proteins Elucidated by Integration of Bioinformatics Prediction and Molecular Dynamics Simulations

Statistics of multiple PWM occurrences in biopolymer sequences

Handling Gaps in Recombination Analysis Using RECCO

Analysis of systems properties of the Yersinia pestis biovars using a genome-scale constraint based model

Improved HMMERHEAD for Better Sensitivity

Branch and Bound Algorithm for Protein Structure Prediction Using Efficient Bounding: Poster Abstract

A Web Based Polyketide Analysis System for Modular Polyketide Synthases

WikiPathways: Pathway Editing for the People

The Fastest Evolving Regions in the Human Genome

Time-series factor analysis for reconstructing transcription factor activities

Review and Comparison of Systems Biology Simulation Tools for Translational Research

A Novel Sliding Window Strategy for Accurate Location of Coding Regions Based on Power Spectrum Analysis

Homology modeling of human protein cathepsin A

Pharmacophore Mapping for MCF Cell Inhibition of Arylbenzothiopene Derivatives

PARRIS: a PARtitioning approach for Robust Inference of Selection

Prediction of symmetric assemblies by docking

Identification of Mammalian Housekeeping Genes

Improving gene correlation estimation by applying filters for low-variability genes

Maximum Likelihood Quantization and Logical Networks for Modeling Biological Interactions

Fast-FIND Sequence Similarity Search: An Improved Approach for siRNA Design

Classifying differentially methylated genes in breast cancer cell lines using the reversible jump Markov Chain Monte Carlo method

Recognition of protein folds using amino acid occurrence

Nonmetric distances for Barcode of Life

Tools for Simulating and Analyzing RNA Folding Kinetics

Nonrandom dispersal of functionally related genes in eukaryotic genomes: Arabidopsis and mouse

SAGA: Subgraph Matching Tool for Biological Graphs

Statistical Features of the Residue Environment in Proteins

The NET-HMM: a HMM Based Likelihood Model for Evolutionary Networks

Joint analysis of genetic and physical interactions in yeast reveals pathway redundancy and protein essentiality

Gene expression analyses in the parasite Schistosoma mansoni using oligonucleotide microarrays

Supervised multivariate analysis of sequence groups to identify specificity determining residues

A Genome-Wide Study of Gene Duplication and Loss Histories

Reconstructing Regulatory Networks from Expression Data using Stochastic Logical Networks

A novel query-profile alignment algorithm for homology modeling

PIPA: A Pipeline for High-Throughput Protein Function Annotation

Finding indels in resequencing

Gene Selection Using a New Error Bound for Support Vector Machines

Reconstruction of pathways for instracellular receptor signaling

The Role of Long-Range Interaction in Protein Secondary Structure
Prediction

Session B  
Tuesday, April 24: 3:30 pm – 5:30 pm
Wednesday, April 25: 7:30 am – 3:00pm    

Metabolic Network and Gene Duplications in Neurospora Crassa

Prediction of Bound MHC-peptide Conformations

Spectral Clustering based Subsequence Feature Map for Protein Classification

Modification-tolerant Shotgun Protein Sequencing of a Snake Venom Proteome

Accurate Elimination of False Protein-Protein Interactions

Genome-wide Binding Site Map of Mammalian Transcription Factors Reveals Rapid Turnover

Peptide Identification Through The Distribution of Fragmentation Events During Mass Spectrometry

Meta-Analysis of Gene Expression during Neural Progenitor Cell Differentiation

A Method to Detect Differential Gene Expression in Cross-species Hybridization Experiments

Function prediction of an interacting protein pair using domain fusion analysis: SpaR and SpaK

Combining Heterogeneous Data and Network Motifs for Filling Missing Enzymes in Yeast Metabolic Pathways

False Discovery Control for Genetic Dissection of Transcriptional Regulation

Prediction of DNA-binding Regions by Detecting Intra-molecular Interactions with Pattern Mining

Prediction for Tissue Specific Gene and Gene Regulatory Network in Mouse Embryonic Stem Cell

Cache-oblivious String Algorithms for Bioinformatics

The Combination Pattern Extraction of Regulatory Motif by Using the Longest Common Prefix

MouseFunc: A Competition for Mouse Gene Function Prediction

A novel mitochondrial inner membrane protein `Miticulon` controls cristae morphology.

Designing C2H2 Zinc Finger Proteins to Target Specific Sites in Genomic DNA

Computational Prediction of Host-Pathogen Protein Interactions

FDR Controlled Topological Core of the Transcriptional Regulatory Network of Saccharomyces cerevisiae

A new approach for inferring regulatory networks from literature and gene expression measurements

A Probabilistic Approach to the Design of Structural Selectivity of Proteins

Combinatorial Principles of Feedback Control in Biochemical Networks

Ion-Pair in Non-Redundant Protein Structures

PROCTOR: An algorithm for reconstructing the internal interaction topology of protein complexes

Systematic Study of the Evolution and Function of Human Regulatory Non-coding Sequences

SHOE: A Promoter Analysis Tool

The Compute Portal Project

Protein Function Prediction Using Motifs, Sequence Features, Alignment Scores

Reverse engineering gene regulatory networks with Bayesian networks from expression data combined with multiple sources of biological prior knowledge

Dendroscope: An interactive viewer for large phylogenetic trees

Comparative Analysis of Metabolic Networks using Gene Expression Data

Validation of a Novel Empirical Bayes Method for SNP Calling on Arrays

XpressVista: Expression Analysis and Visualization Tool

Regression-based Clustering of Short-Time Course Gene Expression Datasets

PAMES: Pathway Mapping and Editing System

Reconstructing phenotypical hierarchies: a linear programming approach

Inferring Dynamic Signalling Networks from Steady State Measurements

Incorporating Phylogenetic Conservation to Detect Motifs that Correlate with Expression

An Improved Algorithm for Error Correction of Reads in DNA Fragment Assembly

MAMUPipe: A Computational Pipeline for Identifying Novel SNP/SIDP in Rhesus Macaques Based on 454 Pyrosequencing Technology

Structural alignment from sequence alone by integration of predicted secondary structure

Boosting the Prediction and Understanding of DNA-Binding Proteins

Functional Enrichment Across Organism Massomes

Kernel filtering by Orthogonal-PLS and application to the general core promoter recognition problem

Classifying Families of Multi-Protein Systems Using Phylogenomic Profiling and Hidden Markov Models

Gene Expression Network Analysis, and Applications to Immunology

Efficient algorithms to monitor bioinformatics data

Modeling position dependencies in transcription factor binding site prediction

Connecting Quantitative Regulatory-Network Models to the Genome

GenMAPP for Pathway Analysis: Current and Future Development

Inferring ancestral states of a protein interaction network

Assessment of Protein Domain Classifications: SCOP, CATH, Dali and EVEREST

Refining Multiple Sequence Alignments with Conserved Core Regions.

Systematic Study of Numerical Solvers for Complex Oscillatory Biochemical System Models

Knowledge-based atomic solvation potentials for analysis of protein structure stability and protein interaction

Towards predicting composition and order of non-ribosomal peptides

A Hybrid SVM / DBN Approach to Detecting SNPs in Diploid DNA Samples

Quantifying the Relative Positions of Proteins Secondary Structure Elements

Structure-based Prediction of Clinical Phenotypes in Lysosomal Storage Diseases

Combining Statistical Alignment and Phylogenetic Footprinting to Detect Conserved Regulatory Elements

Antagonistic regulation allows controlled access to multistability in neuroadaptivity

Leveraging Sequence and Structure to Evaluate Misannotation

Image Alignment of Heterogeneous Macromolecules from Electron Microscopy

A combinatorial approach to kinship analysis using microsatellite data

A Bayesian Approach for Evaluating the Metabolic Pathways Predicted by PathoLogic

Benign SNPs are over-represented near oligomeric interfaces in human aquaporins

Pharmacophore Detection by Multiple Flexible Alignment of Drug-Like Molecules Pharmacophore Detection by Multiple Flexible Alignment of Drug-Like Molecules

The maintenance of sex in bacteria is ensured by its potential to reload genes

Gene expression profile analysis for circadian promoter activities of cyanobacterial bioluminescent reporter strains using non-metric multidimensional scaling

Gene arrangement for cell division cycle microarray experiments without sinusoidal fittings

Robustness and modular design of the Drosophila segment polarity network

Kinetics Analysis Methods For Approximate Folding Landscapes

Distinguishing Folding Behavior using Rigidity

Decoding Multiple Feedback Loops in Biological Networks

The role of the Translation Attenuation pathway in Unfolded Protein Response

Identification of Functional Modules using Network Topology and High-throughput Data

A new method for monoisotopic mass determination

Detection of functional associations in gene expression data by mining co-regulated gene profiles

Estimating Genome-wide Copy Number using Allele Specific Mixture Models

PMRF: a Pathway-based Markov Random Field Model for Analysis of Genomic Data

Search for the `right` model for mitosis

Modeling and Identification of Transcription Factor Binding Sites Using Higher Order Position Weight Matrices

Comparative Genomic Study of the Evolution of Cis-regulatory Elements in Recent Duplicated Genes from S. Cerevisiae

Stochastic Modeling of Yeast Cell Cycle Network using Markov Chains

Between order and disorder in protein structures - analysis of "dual personality" fragments

Ultra-Fast Local Structural Comparison with Writhe Decomposition

Reconstructing Condition-Specific Signal Transduction Hierarchy using Bayesian Networks

Gene mining for conserved cis elements in model genomes using gene expression patterns